FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488580
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17810.36452576855376806No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12990.26587252855213067No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11640.2382414343608007No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC9080.18584469278316756No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7270.1487985590896066No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7090.1451144131974293No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7050.14429571411027875No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6810.13938351958737566No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5930.12137213967006427No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5790.11850669286503746No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5780.11830201809324983No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5770.1180973433214622No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5600.1146178722010725No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5330.1090916533628065No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)