FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474406
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC15950.33620991302808145No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13220.27866426647217785No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT9340.1968777797919925No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG8980.1892893428835217No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7750.16336218344624648No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7320.15429821713890635No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7310.15408742722478216No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7150.15071478859879514No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6820.14375872143269688No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGG6250.13174369632761812No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6070.1279494778733827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)