FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946526

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946526
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474406
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT31650.6671500782030582No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22040.46458097072971255No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17340.36550971109134367No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC14140.2980569385716032No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT12170.256531325489138No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC9680.2040446368722149No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7740.1631513935321223No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7590.15998954482025946No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT6020.12689552830276177No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5600.11804235190954583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)