FastQCFastQC Report
Wed 31 May 2023
EGAF00007946528

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946528
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453224
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22010.48563182885284095No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG18270.4031119269941574No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18250.40267064409651737No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11300.24932483716661075No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG10770.23763084037915025No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA10080.2224065804105696No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9920.21887631722944945No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC8670.19129613612694826No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT8320.18357368541824792No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7670.1692319912449473No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC7360.162392106331527No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7100.15665542866220677No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG6850.15113939244170652No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6830.1506981095440665No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6370.14054860289834606No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5830.12863396466206556No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5690.1255449843785854No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC5670.1251037014809454No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC5580.12311792844156531No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5520.12179407974864526No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5290.11671932642578503No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG5260.11605740207932501No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTCGT5080.11208585600056484No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG4960.10943815861472472No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT4950.10921751716590472No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4570.10083314211074434No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)