FastQCFastQC Report
Sun 21 May 2023
EGAF00007946529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465894
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC17580.3773390513722006No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA16770.35995312238406163No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14270.3062928477293118No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC14190.30457571894035984No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG12680.27216491304889096No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12440.267013526682035No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11490.24662262231323007No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT10790.23159774540990008No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT8910.19124521886952825No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8650.18566455030543427No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCA8610.1848059859109583No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCG8100.17385928988138932No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG8050.17278608438829432No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7920.16999575010624735No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC7210.1547562321042984No Hit
CGGAACCGGCAGTGGCGGTTCGGTGGAACGGGATGCGATCA6850.14702915255401441No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6740.14466810046920545No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT6470.13887279080649245No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6470.13887279080649245No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5830.1251357604948765No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGT5230.11225729457773656No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC5210.11182801238049857No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5150.11054016578878458No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACG5130.11011088359154657No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4960.1064619849150236No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4910.10538877942192859No Hit
CTTCACTTTACGATCCGGTTTCAGGTTACGGTCGACCGGAG4900.1051741383233096No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA4880.1047448561260716No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAG4770.1023838040412626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)