FastQCFastQC Report
Sun 21 May 2023
EGAF00007946530

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946530
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465894
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG37620.8074798130046749No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT33100.7104620364288873No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT17390.3732608704984396No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15860.34042078240973267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14560.31251743958926276No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC12420.26658424448479695No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC11100.2382516194670891No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC10310.22129497267618817No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT9640.2069140190687152No Hit
CCGGATTTTGAACAGAACATTGCGACCACCACC8510.18265957492476828No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAGCC8120.17428857207862733No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8020.17214216109243732No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT7590.16291259385182036No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6870.14745843475125242No Hit
CGTCGCGGTCAGAAAGCCAAATCTAACCCGAAC6840.14681451145539542No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC6680.14338025387749145No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6320.13565317432720747No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5510.11826724533906856No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCTTC5510.11826724533906856No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5470.11740868094459254No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG5390.11569155215564056No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5270.11311585897221257No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGGTG5260.11290121787359356No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5260.11290121787359356No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5200.11161337128187958No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCCGC5180.11118408908464157No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5150.11054016578878458No Hit
CCGGGTACCTTCGACTTCTCCTCTTTTGGTATG5040.10817911370397558No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC4830.10367165063297659No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4810.10324236843573861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)