FastQCFastQC Report
Sun 21 May 2023
EGAF00007946531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476932
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12250.2568500331284124No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC5830.12223964841948118No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5670.11888487247657946No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC5630.11804617849085404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)