FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476932
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11850.24846309327115815No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC7840.16438402120218396No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG7210.15117459092700847No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT6990.1465617740055186No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6030.12643311834810833No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4830.10127229877634547No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)