FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483395
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC15390.3183731730779176No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT12020.24865792985032947No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC11990.24803731937649334No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11580.23955564290073336No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA11360.23500449942593532No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG10310.2132831328416719No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8690.17977016725452272No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT7810.16156559335533052No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA6550.13549995345421448No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG5430.11233049576433352No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG5400.11170988529049743No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTT5040.10426255960446426No Hit
GCGCTGTTTAGCCAGCAGTTCCGCTGCTTTACGTTCTTCCT4980.10302133865679206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)