FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483395
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG26560.549447139502891No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25700.5316563059195896No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC15210.31464951023490106No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12780.26438006185417723No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC11890.2459686177970397No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11450.2368663308474436No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7870.16280681430300273No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC5680.11750224971296766No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5630.11646789892324083No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCCAG5280.10922744339515304No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCGCG5130.10612439102597256No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT4990.10322820881473742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)