FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557575
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA8340.1495762901851769No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7740.13881540599919293No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7040.12626104111554498No Hit
AACCAGTTCCGGAGTCGGCGGACGCGGCGGGCGCTGCAGGA7000.1255436488364794No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG6580.11801102990629064No Hit
GCTGACAACCAGCTCGTCTTCGCCGTTCGGCGGTGGAGGCG6480.11621754920862663No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5990.10742949379007308No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCA5620.10079361520871633No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)