FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557575
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG27460.49248979957853206No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17420.3124243375330673No Hit
GCCGTCGCGAACAGCAACAACGACACCGCTAAA9250.1658969645339192No Hit
CTGTCCTCCATGGCTATCACCTTCAAACGCGCG8010.1436578038828857No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7620.13666322916199614No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG7070.12679908532484419No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6580.11801102990629064No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6230.11173384746446667No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6220.11155449939470026No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6160.11047841097610188No Hit
CCGGATTTTGAACAGAACATTGCGACCACCACC5810.1042012285342779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)