FastQCFastQC Report
Wed 31 May 2023
EGAF00007946543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461696
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT12780.2768055170501802No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11510.249298239534239No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT9370.2029473939561963No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTAC8950.19385049902966453No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8820.19103479345716662No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT8370.18128812032159689No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8330.18042174937621291No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT7900.17110826171333518No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT7620.16504366509564736No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7560.1637441086775714No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6850.14836602439700583No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT6510.14100187136124204No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT6210.13450408927086221No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5720.12389104518990851No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGT5300.11479415026337678No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG5030.10894614638203493No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGG4890.10591384807319103No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)