FastQCFastQC Report
Wed 31 May 2023
EGAF00007946544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461696
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17120.3708067646243416No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT16690.3614932769614638No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG13410.29045085943997784No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGCGT10130.21940844191849185No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9890.21421021624618797No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA9570.20727924868311617No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9230.19991509564735235No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8680.1880024951483227No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8630.18691953146659274No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8260.17890560022179097No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC7910.17132485444968118No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7510.16266114499584142No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT6830.14793283892431383No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5870.12713993623509842No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTGAA5550.12020896867202661No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5370.11631029941779872No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC5330.11544392847241475No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAAAC4950.107213404491267No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTCGT4950.107213404491267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)