FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946550

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946550
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494519
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT28650.5793508439513952No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21740.4396191046248981No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15090.3051449994843474No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14440.2920009140194816No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10080.20383443305515056No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6530.13204750474703703No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6020.1217344530746038No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5120.10353495012325109No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4990.10090613303027791No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)