FastQCFastQC Report
Sun 21 May 2023
EGAF00007946551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503444
Sequences flagged as poor quality0
Sequence length41
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC35720.7095128753148314No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC33190.6592590238437642No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT31390.6235052955244278No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA22090.4387776992078563No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG16240.32257808217001294No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT15350.30489984983434104No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG8710.17300831870078898No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA8270.16426851844495116No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAG8100.16089177743701383No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC7690.152747872653165No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA7480.1485766043492424No Hit
AACACCGCGTTCGGAGCCATCGATCATAACGAAAATTTTAC7020.139439540445412No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6390.12692573553364425No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCA5930.11778867162981384No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT5220.10368581212607558No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC5080.1009049665901272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)