FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946552

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946552
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503444
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT74271.4752385568206194No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT41850.8312741834245716No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC41490.8241234377607043No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC15200.30192037247439635No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC9920.1970427694043429No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT9590.19048791921246452No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG9440.18750844185251983No Hit
TCCTACACCAACGGCAAACTGACTATCACCCCG8040.15969998649303596No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC7860.15612461366110233No Hit
ATGTTTAACGTGCAGATCAAGAAAGGTATCTAT7310.14519986334130508No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6420.12752163100563318No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCATC5900.11719277615782489No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG5740.11401466697388389No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5720.11361740332589125No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5620.11163108508592812No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5420.10765844860600186No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC5320.10567213036603873No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)