FastQCFastQC Report
Sun 21 May 2023
EGAF00007946554

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946554
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537532
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG29860.5555018119851469No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT25780.4795993540849661No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT13320.24779920079176682No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC12830.23868346442630392No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6270.11664421839071906No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5970.11106315530982343No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT5520.10269156068847994No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5500.10231948981642024No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)