FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946556

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946556
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477700
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17560.3675947247226293No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11890.24890098388109694No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT9310.1948921917521457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9050.18944944525853047No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7570.1584676575256437No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7240.15155955620682438No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG7220.1511408833996232No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT6690.14004605400879214No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6280.1314632614611681No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5720.11974042285953528No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5610.11743772241992884No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG5490.1149256855767218No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5450.11408833996231944No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC5290.11073895750471008No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5200.10885492987230479No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5160.10801758425790244No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC4860.10173749214988487No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)