FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946557

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946557
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460349
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTT14910.3238847048652218No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG13270.28825955959500293No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCT11400.24763820492713137No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG11050.24003527758287732No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCT9020.19593829898620396No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCT8460.18377361523539748No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8380.18203580327099655No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG8350.18138412378434624No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCG7960.17291229045789172No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT7690.16704717507803862No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7670.1666127220869384No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7610.1653093631136377No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7490.1627026451670363No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG7010.15227577338063078No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6990.15184132038953055No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6970.15140686739843032No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTG6630.1440211665497264No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6470.14054554262092456No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG6400.13902495715207375No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6340.13772159817877305No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGG6310.1370699186921227No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5980.1299014443389689No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGAC5820.1264258204101671No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5740.12468800844576615No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5520.11990902554366362No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG5290.11491281614601095No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5180.11252332469495968No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGG4820.10470317085515554No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA4800.10426871786405531No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGC4730.10274813239520451No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)