FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946558

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946558
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460349
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17420.37840855524830075No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG17090.37124008089514693No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC13370.2904318245505041No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAATCT13370.2904318245505041No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT12260.2663196835444413No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAATCC11550.25089660236038314No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10070.21874708101896606No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA9670.21005802119696146No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAAGC8870.19267990155295223No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAACTG8840.19202822206630185No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTCAG8460.18377361523539748No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8410.18268748275764693No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA8150.17703959387334392No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG8020.17421564943119242No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAACTG7610.1653093631136377No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7520.16335432465368666No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA7250.15748920927383356No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA7220.1568375297871832No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6600.14336948706307606No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6590.14315226056752595No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6590.14315226056752595No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC6490.1409799956120248No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6180.13424597424997123No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG6040.1312048033122696No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT5970.1296842178434188No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTGGT5930.12881531186121833No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT5930.12881531186121833No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC5700.12381910246356569No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG5370.11665062811041188No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACATT5160.11208887170385948No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5070.11013383324390842No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5010.10883047427060774No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATGTT5000.10861324777505761No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGTTC4950.10752711529730705No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT4710.10231367940410428No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTGGC4680.10166199991745394No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)