FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457252
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC22710.4966626717871108No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC21620.47282461312361673No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT20710.4529231146063877No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA15810.3457611995136161No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG11280.2466911024992783No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT8790.19223535380927803No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8090.17692650879602495No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGAC7130.15593152134927785No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGT6790.14849579662855492No Hit
GGTATCGGAAGAGTCGTCATCCTCTTCTTCGGAGTCTTCTA6160.13471783611662713No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG6120.1338430449730127No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA5870.1283756003254223No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5770.12618862246638615No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT5530.12093987560469939No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTG5430.11875289774566324No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGAC5330.11656591988662708No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5170.11306675531216923No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGA5120.11197326638265113No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5120.11197326638265113No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT4990.10913019516590414No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTC4960.10847410180819331No Hit
ACCAATGATGGTCGGCGGGGTTTTCGGACGAGAGGTTTCCG4790.10475623944783183No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG4650.1016944704451812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)