FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946562

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946562
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457252
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT47951.0486558834078363No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC28780.6294122278306055No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT27020.5909214175115691No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21150.46254581718614685No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12320.26943567223325426No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG8720.19070446930795273No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8450.1847996290885551No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACCAC8170.17867609108325389No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7970.17430213536518158No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGAAC7270.1589932903519285No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA6880.15046407670168746No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC6720.14696491212722962No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT6620.14477793426819346No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGGGC6060.13253085825759098No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGGAA6020.13165606711397654No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6000.13121867154216932No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCACC5480.1198463866751813No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGCTG5460.11940899110337407No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5370.11744071103024153No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC5360.1172220132443379No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT5010.10956759073771137No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATCAC4940.10803670623638606No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC4650.1016944704451812No Hit

[OK]Adapter Content

Adapter graph