FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946565

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946565
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457989
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG11210.24476570397978992No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9830.214633975925186No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT8810.19236269866743524No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT7910.17271157167530224No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT7290.1591741286362773No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7170.15655397837065957No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7110.15524390323785067No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6960.15196871540582851No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGT5440.11878014537467056No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5250.11463157412077583No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5190.11332149898796695No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA4910.10720781503485892No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)