FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946566

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946566
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457989
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT15880.3467332184834134No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15470.33778103840921947No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9750.2128872090814408No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC9380.20480841242911949No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT8410.18362886444870946No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7560.16506946673391718No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG7110.15524390323785067No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7090.1548072115269144No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6600.14410826460897533No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5850.12773232544886448No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5380.11747007024186171No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA5270.11506826583171212No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC5010.10939127358954037No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4930.1076445067457952No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)