FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946568

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946568
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460558
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT9290.2017118365113623No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8720.18933554514306558No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6400.13896186799491053No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC6160.13375079794510136No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5740.12463142535793538No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5550.12050599490183646No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG4990.10834683145228179No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGCGT4750.10313576140247266No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC4670.10139873805253628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)