FastQCFastQC Report
Sun 21 May 2023
EGAF00007946570

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946570
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences305861
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9410.3076560921464325No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT6870.22461183347991406No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC5610.18341665004691673No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5430.17753162384220283No Hit
CAGGGCCGTTATACTACCAACGACGGTTACGTT5000.16347295013094185No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTGGT4620.15104900592099027No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3940.12881668470318217No Hit
CTGGTTGATGAAGGTAAAGTCGATCTGGACGCT3510.11475801099192116No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC3440.11246938969008799No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCTAC3410.11148855198930233No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACAAC3390.11083466018877855No Hit
GCAGTTTCTGTTGACTGCTCTGAATACCCGAAA3380.11050771428851666No Hit
GTGAGCGTAGACTGCTCCGAATACCCAAAACCG3150.10298795858249335No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)