FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences449310
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15400.3427477688010505No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG13790.3069150475173043No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6310.14043755981393694No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5490.12218735394271216No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT5210.11595557632814761No Hit

[OK]Adapter Content

Adapter graph