FastQCFastQC Report
Sun 21 May 2023
EGAF00007946573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453294
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15340.3384117151341072No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14980.3304698495898909No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6380.14074750603361175No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5460.12045162742061444No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT4930.10875943648051817No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT4650.10258242994612768No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)