FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946575

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946575
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425065
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8890.20914448378483289No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA8680.2042040629080258No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7780.18303083057885267No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7510.17667886088010068No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA7160.16844482608542224No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7110.16726853540046815No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6700.15762295178384483No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT6690.157387693646854No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT6680.15715243550986321No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA6530.153623563455001No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGA5960.14021384964652467No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5960.14021384964652467No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5570.13103878230388294No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT5490.12915671720795643No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGG5180.12186371496124121No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5140.12092268241327797No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT4900.11527648712549846No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA4530.10657193605683836No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG4330.1018667733170221No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGT4290.10092574076905884No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA4270.10045522449507722No Hit

[OK]Adapter Content

Adapter graph