FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007946576

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946576
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425065
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21240.49968828296848716No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16530.3888817004458142No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14650.3446531706915413No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12380.2912495735946267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC9000.21173232329173186No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA8420.19808735134626468No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT8080.19008857468857704No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7460.17550257019514662No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG7090.16679801912648654No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG6680.15715243550986321No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC6510.15315304718101938No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCACC6350.14938891698916637No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG6120.14397797983837765No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT5810.13668497759166245No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC5430.12774516838601155No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTACC5370.12633361956406666No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5290.12445155446814016No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC5070.11927587545434226No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCGAA4970.11692329408443415No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC4960.11668803594744334No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC4770.11221813134461789No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG4330.1018667733170221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)