FastQCFastQC Report
Wed 31 May 2023
EGAF00007946577

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946577
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532876
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC11740.22031391918570176No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC10540.19779460887711212No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG10390.19497969508853844No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCA9950.18672261464205556No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT8570.16082540778717752No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7940.14900276987516797No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG7930.1488151089559297No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7770.14581253424811774No Hit
TTCTGCGGAGTTCGGTACGATTTCCAGCTGCGGAACTTTAT6600.12385620669724288No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGC6150.11541146533152179No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCAC6050.11353485613913933No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCG5850.10978163775437438No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTG5820.10921865499665963No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCA5680.1065914021273242No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA5640.10584075845037119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)