FastQCFastQC Report
Wed 31 May 2023
EGAF00007946578

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946578
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences532876
Sequences flagged as poor quality0
Sequence length33
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT23920.44888491881788634No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG19430.3646251660799135No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC12120.22744503411675512No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCGAT12090.22688205135904035No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC11540.21656070080093678No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT11340.21280748241617187No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG11230.21074321230455115No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7670.1439359250557353No Hit
TCCATCTCTAGCAGCGAGGAAATCGTCCCAAAC7100.13323925265915523No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6440.12085363198943094No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTACC6420.12047831015095443No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAACTG6390.1199153273932397No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTCAC6390.1199153273932397No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)