FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517561
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA21850.42217245889856464No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG20210.39048537273867234No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC14270.2757162923790626No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC13540.2616116747591105No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT11030.2131149758192754No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT10520.2032610648793089No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAA7840.15147972895948497No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGG7470.14433081317950927No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATAT6920.13370404647954542No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGG6280.12133835431958745No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGG6050.11689443369960256No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTA5780.1116776573196203No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA5750.11109801549962225No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTA5190.10027803485965905No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)