FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946580

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946580
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences517561
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG52221.0089631946765696No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT29750.5748114714980457No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC15530.3000612488189798No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT14250.2753298644990639No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC10490.2026814230593109No Hit
ATGTGCGAAGACACCATCACCTACGAATGTCCG7500.1449104549995073No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACACT7060.1364090416395362No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGAGC6830.13196512101955132No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGAGC6300.12172478219958614No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6040.11670121975960322No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGTCC5850.1130301548996157No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTACC5740.11090480155962293No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA5540.10704052275963606No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT5340.10317624395964921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)