FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946589

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946589
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515998
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14440.27984604591490664No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7990.15484556141690473No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC7640.14806258938988137No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT5490.10639576122388071No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5420.10503916681847605No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5360.10387637161384346No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)