FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946590

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946590
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences515998
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG89611.7366346381187523No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16840.3263578541002097No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13830.26802429466780875No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7280.1410858181620859No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6620.12829507091112757No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5570.10794615483005747No Hit
GACGCTAACGGCAACAACCTGACTTTCGAAC5520.10697715882619699No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)