FastQCFastQC Report
Wed 31 May 2023
EGAF00007946592

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946592
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527594
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG76751.4547170741138074No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10500.19901666811980423No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7900.14973635029966226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6900.13078238190729993No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5460.1034886674222982No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5350.10140373089913834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)