FastQCFastQC Report
Sun 21 May 2023
EGAF00007946594

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946594
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510156
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG26090.5114121954853026No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16440.32225436925175827No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10240.2007229161276159No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9940.1948423619441896No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9550.1871976415057355No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7490.1468178361128753No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5940.11643497283183968No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5250.10290969820995931No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5130.10055747653658881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)