FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946598

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946598
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557762
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA30160.5407324270925592No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29190.5233414969108687No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23410.41971306758079613No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18920.3392127825129715No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17170.3078373930099218No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13940.24992738838429296No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10960.19649958225909978No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10210.18305298675779275No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9980.17892936413739194No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9690.17373001387688655No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT9630.172654286236782No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9620.17247499829676458No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9150.1640484651159455No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7430.13321093943294812No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7390.1324937876728784No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6520.11689573689136228No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6480.11617858513129256No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC6280.11259282633094403No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5640.1011183981698287No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)