FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946599

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946599
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521879
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12650.2423933517156276No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9950.1906572213099205No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8980.17207053742342573No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8870.1699627691476377No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT7980.15290900764353424No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT6810.13049001780106115No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6680.12799901892967527No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG6640.1272325577384796No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6390.12244217529350672No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5670.10864587385198486No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5460.10462195259820764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)