FastQCFastQC Report
Wed 31 May 2023
EGAF00007946600

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946600
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences521879
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG76821.4719887176912656No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA20390.39070359221198786No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12180.23338743271907855No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9340.17896868814418668No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9020.1728369986146214No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8190.15693292889731145No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7830.1500347781765505No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7540.14447793454038196No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7340.1406456285844037No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT6910.13240617077905031No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA6550.12550802005828937No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6010.11516079397714796No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5600.10730456676739245No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)