FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512607
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48220.9406816528061458No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31310.6107993062911743No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG18190.35485274293952285No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15010.2928169143222781No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12670.2471679083586451No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12490.2436564463614426No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9140.17830423696906206No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7260.14162896722050225No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6950.1355814493364312No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA5650.11022089046774625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)