FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492721
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25710.5217963106910402No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT14910.30260532837041654No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9670.19625711102226207No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9570.19422756488966372No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC9120.18509460729297106No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8480.17210551204434152No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8440.17129369359130217No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5740.11649594801114627No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG5550.11263981035920936No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5150.1045216258288159No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4980.10107139740339868No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)