FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946609

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946609
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535780
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA20430.38131322557766245No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA19120.35686289148531114No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG17880.3337190637948412No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17840.3329724887080518No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG16760.31281496136473924No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15610.29135092761954534No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG12570.23461122102355442No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG11750.2193064317443727No Hit
GCGAGAGGTCGCAGATTTGTACGGGTGCAGGGTATCGGTACGAG11700.21837321288588601No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10790.2013886296614282No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT10640.19858897308596812No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10190.19019000335958788No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG10140.1892567845011012No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG10010.1868304154690358No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9920.18515062152375975No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT9430.17600507671059015No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9300.17357870767852476No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG8450.157713987084251No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8430.1573406995408563No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT8150.15211467393333084No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA7610.14203591026167459No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG7370.13755645974093844No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG7080.13214379036171564No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6630.1237448206353354No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6380.11907872634290192No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG6330.11814550748441524No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6160.11497256336556048No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5740.10713352495427227No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5720.1067602374108776No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5700.10638694986748291No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG5560.10377393706372019No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5480.10228078689014147No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5480.10228078689014147No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)