FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946610

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946610
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535780
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT49250.9192205756093919No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19200.35835604165888985No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18430.34398447123819476No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG18260.34081152711934004No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG17960.3352122139684199No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17610.32867968195901304No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG17260.3221471499496062No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG14370.2682070999290754No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13760.2568218298555377No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG12110.22602560752547685No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC12100.22583896375377954No Hit
ATCGGCTCCCTGGCTGGTGCAATTGGCGGTA11500.21464033745193922No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT11500.21464033745193922No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC11080.206801299040651No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10540.19672253536899476No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10360.19336294747844265No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9850.1838441151218784No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9360.1746985703087088No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9170.17115233864645937No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG9080.1694725447011833No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA9040.16872596961439398No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8280.15454104296539625No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG7780.14520885438052933No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT7680.14334241666355593No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG7220.1347568031654784No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7180.134010228078689No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7080.13214379036171564No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5800.1082533875844563No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5760.10750681249766696No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5760.10750681249766696No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5750.10732016872596961No Hit
AACTATATCGACTCCGTTCTGAACGAGGTTC5560.10377393706372019No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5540.1034006495203255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)