FastQCFastQC Report
Sun 21 May 2023
EGAF00007946615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460031
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG19960.43388380348280875No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT16910.367583923692099No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT16090.3497590379778754No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14410.31323975992922215No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11470.249331023344079No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11260.24476611358799732No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10820.23520154076573102No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT10160.2208546815323315No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9850.2141160052257348No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9720.21129010871006518No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9600.20868158884944707No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9560.20781208222924105No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA9150.1988996393721293No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8690.18890031323975995No Hit
CATGGAGTCCTGCAGCGGCATCGGCGGAGGCGGGAAGCGGGTTG8180.17781410383213306No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG8060.17520558397151495No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG7440.1617282313583215No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7240.15738069825729134No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG7220.15694594494718833No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6690.14542498222945846No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG6320.13738204599255266No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG6080.1321650062713165No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5940.12912173310059538No Hit
CATAGAGTCCTGCAGCGGCATCGGCGGCGGCGGGAAACGGGTCG5920.12868697979049237No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5840.1269479665500803No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC5800.1260784599298743No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5660.12303518675915318No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5640.12260043344905017No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5590.12151355017379264No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5150.11194897735152631No Hit
AACCAGCGGTACCAGGGACAGCTGCAGGCGTGGCGGACCGGTTT4770.10368866445956904No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4660.10129752125400243No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)