FastQCFastQC Report
Wed 31 May 2023
EGAF00007946616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences460031
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25290.5497455606252621No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18870.4101897480821945No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCGC18750.4075812282215764No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18490.40192943519023716No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT16330.3549760776991116No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT15850.3445419982566392No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12700.2760683519154144No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11620.2525916731698516No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10990.23889694390160665No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10970.23846219059150361No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10440.22694122787377372No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA10180.22128943484243455No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9970.21672452508635287No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9880.21476813519088928No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9200.19998652264738684No Hit
CCGCACCTGCAGTCTGAAACCGGTCCGCCAC8490.18455278013872978No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC8100.176075090591721No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7670.1667278944245062No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7330.15933708815275494No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC7250.15759807491234287No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG7160.1556416850168793No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6670.14499022891935545No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6240.1356430327521406No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6230.13542565609708912No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6150.13368664285667706No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5970.12977386306574992No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG5750.12499157665461676No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA5730.12455682334451375No Hit
CCGCACCTGCAGAGCGAAACCGGTCCGCCGC5600.12173092682884414No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5570.12107879686368962No Hit
GGTCACGGTCAGGACCAGGTTAGCCAGTTCC5260.11434012055709289No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5230.11368799059193838No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5030.10934045749090822No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4830.10499292438987808No Hit
GTTCACGGCCACACCCAGGGTCCGTGGGACC4650.10108014459895094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)