FastQCFastQC Report
Sun 21 May 2023
EGAF00007946618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences504894
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA34280.6789543943877329No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG30350.6011162739109596No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20330.4026587759014763No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18050.35750078234243227No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17890.3543318003382888No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG17260.34185393369697403No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14060.27847429361410514No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG13760.27253245235633616No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13150.2604507084655393No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12070.23906007993757106No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC11850.23470272968187383No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG11020.21826363553537972No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG10930.21648108315804904No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10270.20340903239095728No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG10240.2028148482651804No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC9150.1812261583619532No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8670.17171921234952287No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG8580.16993665997219218No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT6920.13705847167920396No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA5910.11705427277804846No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5860.11606396590175362No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC5710.11309304527286916No Hit
GCTCTGACCCTGAGCCTGCCGAAACAGCAGG5510.10913181776768986No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG5440.1077453881408771No Hit

[OK]Adapter Content

Adapter graph