FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946620

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946620
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences478351
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG29610.6190015281665555No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19190.4011698522632962No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18100.3783832374135311No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12040.2516980209093323No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11580.24208165133970663No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10380.21699546985372667No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10090.21093297599461483No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9900.20696099725933467No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9790.20466143062311984No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8120.16974982805513106No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7330.15323475857686092No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7020.14675416169298278No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6630.13860115271003928No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6560.1371377921233571No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6430.13442012246237597No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6030.1260580619670493No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5330.11142445610022766No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5190.10849773492686333No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4900.10243524106775151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)